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• AbOrygen - Intuitive bioinformatics - Develops sequence analysis and structure visualization software
• Accelrys - Supplier of bioinformatics software for gene and protein sequence analysis, high-throughput screening systems and databases for managing bioassay information. Formerly Oxford Molecular, Genetics Computer Group (GCG), Molecular Simulations Inc. (MSI), and Synopsys Scientific Systems.
• AgileBio - LIMS and collaborative software for molecular biology labs.
• AlgoNomics - Provides online, as well as on-site, tools for protein sequence analysis and structure prediction. Focused on the relationship between the amino acid sequence of proteins and their function.
• Ariadne Genomics Inc. - Software for biological pathways visualization and analysis, functional interpretation of genetic information.
• Array Genetics, Inc. - Provider of software solutions to meet the needs of researchers seeking to extract information from genome sequencing projects and DNA microarray screening. Free access to SeqIt, an on-line protein database mining program.
• Bioalma - Develops tools for microarray data analysis and text mining from scientific texts.
• BioBase - Provides expert level, human-curated databases for drug discovery and life science researchers for gene expression, regulation and transcription pathway discovery.
• BioBase - Biological databases, bioinformatics tools, and consulting in gene regulatory processes such as transcriptional control and signal transduction.
• BioBind - Provides easy to install bioinformatics software, including the EMBOSS and the Jemboss packages, for nucleotide and protein analysis.
• Biodatabases - Molecular database technologies. To-Oracle database conversions. Data-mining and eCommerce development for genomics and proteomics.
• BioDiscovery, Inc. - Offers microarray bioinformatics software and services.
• BioInformatics Services - Consulting firm specializing in applying computational biology to build solutions to biological and data analysis problems.
• Bioinformatics Solutions Inc. - Professional algorithmic and software solutions for the bioinformatics industry: PROSPECT for protein structure prediction, PatternHunter for identifying all approximate repeats in a complete genome, and COPIA for discovering motifs in a family of protein sequences.
• Biomax Informatics AG - Offers annotated genome database, and DNA and protein sequence analysis tools.
• Bio::Neos - Supplier of bioinformatics software for mutation discovery. Provide custom software.
• Biosiris - Bioinformatics company specialising in molecular modeling.
• BioSoftSolutions - Develops software analysis tools for mass spectrometry-based proteomics and microarray-based image processing.
• Bioxing - Provides database systems and data mining for high-throughput DNA and protein microarrays.
• BioXpr SA - Provides expert services in the field of bioinformatics including Proteomics, Genomics, Metabolomics, Databases and Custom software.
• Bioxtal, proteomic services - Provides crystallography services and recombinant protein production by means of Semliki Forest Virus.
• CeuticalSoft - provides custom Excel programming services for drug discovery applications.
• CLC bio - Supplier of bioinformatics software for DNA, RNA and protein analysis. Provides bioinformatics consulting services, focusing on custom designed data analysis and development of specialized bioinformatics algorithms. Located in Aarhus, Denmark.
• Clondiag Chip Technologies - Develops software for the analysis and management of microarray data.
• Compugen - Develops and markets platforms, tools and products that accelerate post-genomic research, the advanced study of proteins and protein pathways, and drug target discovery.
• Core LIMS - The Core LIMS from Core Informatics is a web-based Laboratory Information Management System (LIMS).
• CubicDesign - CubicDesign develops Windows software for DNA sequence assembly and analysis.
• Decodon - Developers of the Delta2D software for difference analysis of 2D electrophoresis gels.
• DNA Miners - Commercial company working in areas of human genome, genomic marker, human genomic segment, and genetics.
• DNA Software, Inc. - Provides consulting on nucleic acid thermodynamics and OMP, the Oligonucleotide Modeling Platform, a software framework for building applications to design multiplex PCR primers, probes and DNA microarrays.
• ePitope Informatics - Specializes in epitope prediction and protein analysis for proteomics, diagnostics, therapeutics, life science research, and antibody production.
• ForScience, Inc. - A bioinformatics company providing software and curation services to biotechnology and pharmaceutical companies.
• Genamics - Supplier of DNA and protein sequence analysis software.
• Gene Biotechnologies - Offering human, mouse and drosophila genome databases, a View&Search program and advanced products in development. Services include converting custom databases and adding special features.
• Gene Codes Corp. - Developer of Sequencher for DNA sequence alignment and analysis on Windows and Mac platforms.
• GeneData - Provides customizable software solutions and related scientific services for the analysis of genomics and proteomics data.
• GeneGo Inc. - Developer of bioinformatics software to parse and display microarray data.
• Gene-IT - A bioinformatics company that provides life-science research organizations with scalable high performance software and scientific expertise for biological sequence data mining.
• Genolyze - Provides microarray and gene expression data analysis.
• Genomatica, Inc. - Innovator of in silico systems biology, building proprietary cellular-level models to accelerate the identification & production of more effective drugs, chemical & agricultural products, & enabling in-silico biological discovery.
• Genomatix Software GmbH - Provides software for microarray analysis.
• Genomining - Specializes in the data-mining, discovery, interpretation and management of biological data.
• Genostar - Offers software for the analysis, exploration, and simulation of systems biology.
• Geospiza, Inc. - Geospiza's bioinformatics software helps service, research, and clinical laboratories manage and analyze data from genomics, DNA sequencing, genotyping and proteomics.
• Health Discovery Corporation Home Page - HDVY is a biotech company performing biomarker discovery in genomics and proteomics using advanced technologies such as support vector machines and fractal genomics modeling.
• INCOGEN, Inc. - The Institute for Computational Genomics (INCOGEN) focuses on computational and data management solutions to the complex challenges faced by researchers in plant and animal genomics.
• Industry Support Programme - Helping industry adapt quickly to, and maximise benefits from, developments in the fast-growing fields of bioinformatics, computational biology, and information technology in general - from the European Bioinformatics Inst.
• Informagen - Produces DNA secondary structure prediction software including alignments and Chous-Fasman analysis.
• Informatics - Providing integrated information management solutions for the life sciences.
• Ingenuity Pathways Analysis - Offer a web-based mammalian biology knowledgebase and analysis tool used for drug discovery and genomic data analysis.
• Inpharmatica - Developers of the Biopendium, a resource of protein structure and function information that enables identification of distantly related proteins and thus exploration of the human proteome.
• InPharmix - Provider of text mining tools to assist in the analysis of genomics and DNA microarray research projects.
• Insilico - Provides bioinformatics tools for life science and pharmaceutical industry.
• Insilicos - Provides proteomics, metabolomics, and systems biology software for mass spectrometry data.
• Invenio Biosolutions - Offers custom software development for gene and protein sequence analysis, and drug discovery.
• IO Informatics - Provides scientists in pharmaceutical and biotechnology research tools to optimize the mining, analysis and management of life science data.
• Iobion Informatics LLC - Specializing in software for the analysis of microarray data (GeneTraffic).
• IT.Omics - Provider of bioanalysis and expertise in text data mining.
• LabVantage Solutions - LabVantage Solutions is a global provider of workflow driven automation tools, knowledge management software, implementation services, and consulting to leading discovery-oriented, high throughput screening, genomics, proteomics, pharmaceuticals, and combinatorial chemistry companies.
• LION Bioscience AG - Biological information technology company providing integrated solutions for genomics and bioinformatics to the life science industry.
• Logical Depth - Accelerated sequence analysis tools for HMMsearch and Smith-Waterman.
• Ludsi - Offer online 2D gel processing from uploaded gel images.
• MathEcology, LLC - Mathematical model development for biological, ecological, and epidemiological applications.
• MathSoft Inc. - (now Insightful) is developer of S-PLUS, excellent statistical data mining software. Insightful provides many other data analysis tools.
• Matrix Science - Mascot, the on-line search engine for protein identification using mass spectrometry data
• MDL Information Systems - Discovery informatics company for life sciences and chemistry. Makers of Assay Explorer software to track and datamine imaging based experiments.
• MediCel Ltd. - Software and services for reverse engineering and modeling of biochemical pathways for drug target discovery and validation projects related to inflammatory diseases.
• Metabolic Explorer - Explores and designs metabolic pathways.
• MetaHelix Life Sciences - Metahelix Life Sciences is a company that specializes in scientific consulting, contract research, application software and product development in the emerging areas of life science informatics and genomics.
• Metalife AG - Developing bioinformatics software for sequence analysis, sequence based predictions, and biological pathway analysis and visualization.
• Millegen - Provides a proprietary bioinformatic platform for mutations analysis in the field of molecular evolution.
• MiraiBio Inc - Hitachi Genetic Systems, by MiraiBio Inc, offers quality instruments, software, consumables and supporting applications for the genetics/molecular biology laboratory.
• NextBio - Offers the Knowledge Management System to manage and query biological information across different research domains.
• NimbleGen Systems, Inc. - Provides customized DNA microarray using provided design software
• Nonlinear Dynamics - Develops scientific software for proteomics, genomics, drug discovery and bioinformatics. Products include Phoretix, Progenesis and Progenera.
• Ocimum Biosolutions - Contract R&D services in bioinformatics, LIMS, genomics, and proteomics for the biotech and pharma industries.
• OmniViz Inc. - Supplier of Clustering and Data Visualization software to the Life and Chemical Sciences industries.
• Oncomine - Offers online cancer gene expression analysis. Use a compendium of 10,000+ cancer transcriptome profiles with an analysis engine to provide data-mining and data visualization.
• Prokaria - A biotechnology company that is combining ecology and bioinformatics to directly discover novel genes in nature. Currently focussing on thermophiles.
• Quantiom - Products and services for bioanalytical data analysis.
• 3rd Millennium, Inc. - Our bioinformatics consulting, systems development, and integration services help ensure your bioinformatics systems are fully geared toward your success and unique strategies. We focus on deploying the best technologies for today while working on the best technologies for tomorrow.
• Relevant Software Inc. - Project development services for life science software projects.
• Rosetta Biosoftware - Provides software solutions designed to accelerate life science research using advanced genomic data analysis technology.
• Samurai Scientific - A data analysis company with the aim of providing novel, rapid and accurate analyses of large datasets. We provide software, in-house analysis and custom solutions to client needs.
• SBI Science LLC - Consulting in gene product analysis, including structure-based sequence alignment, homology modeling, and x-ray crystallography.
• Seascape Learning - Distributes structural bioinformatics software and educational material.
• SilicoCyte - Supplier of microarray analysis equipment designed for automated image analysis.
• Silicon Genetics - Bioinformatics tools for visualization and analysis of gene expression data, allowing scientists to extract knowledge for drug discovery and gene function identification.
• Syngene - Provides bio imaging systems, gel documentation systems and gel analysis software for UV, white light, chemiluminescence, fluorescence applications.
• Tahoe Informatics - Consulting group specializing in training, marketing, and testing.
• Teranode Corporation - Develops software that integrates computational and experimental biology
• Thermo Electron Corporation - Markets bioinformatics software for high throughput experiments in addition to its products.
• TIB MOLBIOL - DNA primer and probe synthesis and diagnostic PCR assay design.
• TimeLogic Corporation - With our DeCypher Bioinformatics Accelerator, TimeLogic speeds genomic discovery for biotechnology and pharmaceutical companies. DeCypher dramatically accelerates computationally intensive algorithms, including BLAST, Smith-Waterman and HMM analysis.
• Tripos, Inc. - Provider of discovery research software & services to pharmaceutical, biotechnology, & other life sciences companies worldwide.
• UniPro - Russian company that provides customizable software for analysis, annotation, and manipulation of genetic sequences
• United Bioinformatica Inc. (UBI) - Provides bioinformatics software in Canada for laboratory information management systems (lims), sequence analysis, microarray expression analysis, and proteomics (1d and 2d gel image analysis).
• VizXlabs - Develops software systems for the acquisition, management and analysis of molecular biology data and information.

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